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2012

Wynn, R.M., Li, J., Brautigam, C.A., Chuang, J.L., Chuang, D.T. (2012). Structural and biochemical characterization of human mitochondrial branched-chain alpha-ketoacid dehydrogenase phosphatase. J. Biol. Chem., in press. [PubMed]

Deka, R.K., Brautigam, C.A., Goldberg, M., Schuck, P., Tomchick, D.R., & Norgard, M.V. (2012). Structural, bioinformatic, and in vivo analyses of two Treponema pallidum lipoproteins reveal a unique TRAP transporter. J. Mol. Biol., in press.

Mendoza, J.L., Schmidt, A., Li, Q., Nuvaga, E., Barrett, T., Bridges, R.J., Feranchak, A.P., Brautigam, C.A., Thomas, P.J. (2012). Requirements for efficient correction of deltaF508 CFTR revealed by analyses of evolved sequences. Cell, 148, 164-174. [PubMed]

Thompson, J.W., Salahudeen, A.A., Chollangi ,S., Ruiz, J.C., Brautigam, C.A., Makris, T.M., Lipscomb, J.D., Tomchick, D.R., Bruick, R.K. (2012). Structural and molecular characterization of the iron-sensing hemerythrin-like domain within F-box and leucin-rich repeat protein 5 (FBXL5). J. Biol. Chem., in press. [PubMed]


2011

Li W., Ma C., Guan R., Xu Y., Tomchick D.R., Rizo J. (2011). The crystal structure of a Munc13 C-terminal module exhibits a remarkable similarity to vesicle tethering factors. Structure, 19, 1443-1455. [PubMed]

Haines, D.C., Hegde, A., Chen, B., Zhao, W., Bondlela, M., Humphreys, J.M., Mullin, D.A., Tomchick, D.R., Machius, M., Peterson, J.A. (2011). A single active-site mutation of P450BM-3 dramatically enhances substrated binding and rate of product formations. Biochemistry, 50, 8333-8341.[PubMed]

Yu, B., Cheng ,H.C., Brautigam, C.A., Tomchick ,D.R., Rosen, M.K. (2011). Mechanism of actin filament nucleation by the bacteral effector VopL. Nat. Struct. Molec. Biol., 18, 1068-1074. [PubMed]

Padrick, S.B., Doolittle, L.K., Brautigam, C.A., King, D.S., Rosen, M.K. (2011). Arp2/3 complex is bound and activated by two WASP proteins. Proc. Natl. Acad. Sci., 108, E472-E479. [PubMed]

Brautigam, C.A., Wynn, R.M., Chuang, J.L., Naik, M.T., Young, B.B., Huang, T. & Chuang, D.T. (2011). Structural and thermodynamic basis for weak interactions between dihydrolipoamide dehydrogenase and subunit-binding domain of the branched-chain alpha-ketoacid dehydrogenase complex. J. Biol. Chem., 286, 23478-23488. [PubMed]

Kang, J., Chaudhury, J. Dong, H., Brautigam, C.A., & Yu, H. (2011). INCENP-mediated mitotic centromere targeting and Sgo1 binding of HP1 are dispensible for sister-chromatid cohesion in human cells. Mol. Biol. Cell, 22, 1181-1190. [PubMed]

Padrick, S.B. & Brautigam, C.A. (2011). Evaluating the stoichiometry of macromolecular complexes using multisignal sedimentation velocity. Methods, in press. [PubMed]

Brautigam, C.A. (2011). Using Lamm-Equation modeling of sedimentation velocity data to determine the kinetic and thermodynamic properties of macromolecular interactions. Methods, in press. [PubMed]

Hoopman, T.C., Liu, W., Joslin, S.N., Pybus, C., Brautigam, C.A., & Hansen, E.J. (2011). Identification of gene products involved in the oxidative stress response of Moraxella catarrhalis. Infect. Immun., 79, 745-755. [PubMed]

Selyunin, A.S., Sutton, S.E., Weigele, B.A., Reddick, L.E., Orchard, R.C., Bresson, S.M. Tomchick, D.R., & Alto, N.M. (2011). The assembly of a GTPase-kinase signalling complex by a bacterial catalytic scaffold. Nature, 469, 107-111. [PubMed]


2010

Dorwart, M.R., Wray, R., Brautigam, C.A., Jiang, Y. & Blount, P. (2010). S. aureus MscL is a pentamer in vivo but of variable stoichiometries in vitro: implications for detergent-solubilized membrane proteins. PLoS Biology, 8, e1000555. [Link]

Otomo, T., Tomchick, D.R., Otomo, C, Machius, M., & Rosen, M.K. (2010). Crystal structure of the Formin mDia1 in autoinhibited conformation. PLoS One, 5, e12896. [Link]

Xue, M., Craig, T.K., Shin, O.H., Yi, L., Brautigam, C.A., Tomchick, D.R., Sudhof, T.C., Rosenmund, C., & Rizo, J. (2010). Structural and mutational analysis of functional differentiation between synaptotagmins-1 and -7. PLoS One, 5, e12544. [Link]

Labandeira-Rey, M., Brautigam, C.A., & Hansen, E.J. (2010) Initial characterization of the CpxRA proteins and the associated regulon in Haemophilus ducreyi. Infect. Immun., 78, 4779-4791. [PubMed]

Padrick, S.B., Deka, R.K., Chuang, J.L., Wynn, R.M., Chuang, D.T., Norgard, M.V., Rosen, M.K., & Brautigam, C.A. (2010). Determination of protein complex stoichiometry through multisignal sedimentation velocity experiments. Anal. Biochem., 407, 89-103. [PubMed]

Deng, X., Lee, J., Michael, A.J., Tomchick, D.R., Goldsmith, E.J., & Phillips, M.A. (2010). Evolution of substrate specificity within a diverse family of b/a-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine. J. Biol. Chem., 285, 25708-25719. [PubMed]

Luong, P., Kinch, L.N, Brautigam, C.A., Grishin, N.V., Tomchick, D.R., & Orth, K. (2010). Kinetic and structural insights into the mechanism of AMPylation by VopS FIC domain. J. Biol. Chem., 285, 20155-20163. [PubMed]

Tian, W., Yu, J., Tomchick, D.R., Pan, D., & Luo, X. (2010). Structural and functional analysis of the YAP-binding domain of human TEAD2. Proc. Natl. Acad. Sci (USA), 107, 7293-7298. [PDF]

Shin O.H., Lu, J. Rhee, J.S., Tomchick, D.R. Pang, Z.P., Wojcik, S.M., Camacho-Preez, M., Brose, N., Machius, M., Rizo, J., Rosenmund, C., & Sudhof, T.C. (2010). Munc13 C2B domain is an activity-dependent Ca2+ regulator of synaptic exocytosis. Nat. Struct. Mol. Biol., 17, 280-288. [PDF]

Yu, B., Martins, I.R., Li, P., Amarasinghe G.K., Umetani, J., Fernandez-Zapico, M.E., Billadeau, D.D., Machius, M., Tomchick, D.R., & Rosen, M.K. (2010). Structural and energetic mechanisms of cooperative autoinhibition and activation of Vav1. Cell, 140, 246-256. [PDF]


2009

Attia, A.S., Sedillo, J.L., Hoopman, T.C., Liu, W., Liu, L., Brautigam, C.A., & Hansen, E.J. (2009). Identification of a bacteriocin and its cognate immunity factor expressed by Moraxella catarrhalis. BMC Microbiol., 9, 207. [PDF]

Huerta, C., Borek, D., Machius, M., Grishin, N.V., & Zhang, H. (2009). Structure and mechanism of a eukaryotic FMN adenylyltransferase. J. Mol. Biol., 389, 388-400. [PDF]

Brautigam, C.A., Wynn, R.M., Chuang, J.L., & Chuang, D.T. (2009). Subunit and catalytic component stoichiometries of an in vitro reconstituted human pyruvate dehydrogenase complex. J. Biol. Chem., 284, 13086-13098. [PDF]

Davis, L., Abdi, K., Machius, M., Brautigam, C., Tomchick, D.R., Bennett, V., Michaely, P. (2009). Localization and structure of the ankyrin-binding site on beta2-spectrin. J. Biol. Chem., 284, 6982-6987. [PDF]

Scheuermann, T.H., Tomchick, D.R., Machius, M., Guo, Y., Bruick, R.K., Gardner, K.H. (2009). Artificial ligand binding within the HIF2alpha PAS-B domain of the HIF2 transcription factor. Proc. Natl. Acad. Sci. USA, 106, 450-455. [PDF]


2008

Kato, M., Wynn, R.M., Chuang, J.L., Tso, S.C., Machius, M., Li, J., & Chuang, D.T. (2008). Structural basis for inactivation of the human pyruvate dehydrogenase complex by phosphorylation: role of disordered phosphorylation loops. Structure, 16, 1849-1859. [PDF]

Padrick, S.B., Cheng, H.C., Ismail, A.M., Panchal, S.C., Doolittle L.K., Kim, S., Skehan, B.M., Umetani, J., Brautigam, C.A., Leong, J.M., Rosen, M.K. (2008). Hierarchical regulation of WASP/WAVE proteins. Mol. Cell, 32, 426-438. [PDF]

Kang, J., Yang, M., Li, B., Qi, W., Zhang, C., Shokat, K.M., Tomchick, D.R., Machius, M., & Yu, H. (2008). Structure and substrate recruitment of the human spindle checkpoint kinase Bub1. Mol. Cell, 32, 394-405. [PDF]

Rezacova, P., Kozisek, M., Moy, S.F., Sieglova, I., Joachimiak, A., Machius, M., & Otwinowski, Z. (2008). Crystal structures of the effoector -binding domain of repressor CggR from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates. Mol. Microbiol., 69, 895-910. [PDF]

Attia, A.S., Sedillo, J.L., Wang, W., Liu, W., Brautigam, C.A., Winkler, W., & Hansen, E.J. (2008). Moraxella catarrhalis expresses an unusual Hfq protein. Infect. Immun., 76, 2520-2530. [PDF]

Lee, J., Tomchick, D.R., Brautigam, C.A., Machius, M., Kort, R., Hellingwerf, H.J., & Gardner, K.H. (2008). Changes at the KinA PAS-A dimerization interface influence histidine kinase function. Biochemistry, 47, 4051-4064. [PDF]

Yang, M., Li, B. Liu, C.J., Tomchick, D.R., Machius, M., Rizo, J., Yu, H., Luo, X. (2008). Insights into mad2 regulation in the spindle checkpoint revealed by the crystal structure of the symmetric mad2 dimer. PLoS Biol., 6, e50. [PDF]

Haines, D.C., Chen, B., Tomchick, D.R., Bondlela, M., Hegde, A., Machius, M., & Peterson, J.A. (2008). Crystal structure of inhibitor-bound P450BM-3 reveals open conformation of substrate access channel. Biochemistry, 47, 3662-3670. [PDF]

Huang, N., Sorci, L., Zhang, X., Brautigam, C., Li, X., Raffaelli, N., Magni, G., Grishin, N.V., Osterman, A., & Zhang, H. (2008). Bifunctional NMN adenylyltransferase/ADP ribose pyrophosphatase: structure and function in bacterial NAD metabolism. Structure, 16, 196-209. [PDF]

Hoopman, T.C., Wang, W., Brautigam, C.A., Reilly, T.J., and Hansen, E.J. (2008). Moraxella catarrhalis synthesizes an autotransporter that is an acid phosphatase. J. Bacteriol., 190, 1459-1472. [PDF]


2007

Hegde, A., Haines, D.C., Bondlela, M., Chen, B., Schaffer, N., Tomchick, D.R., Machius, M., Nguyen, H., Chowdhary, P.K., Stewart, L, Lopez, C., and Peterson, J.A. (2007). Interactions of substrates at the surface of P450s can greatly enhance substrate potency. Biochemistry, 46, 14010-14017. [PDF]

Yang, M., Li, B., Tomchick, D.R., Machius, M., Rizo, J., Yu, H., and Luo, X. (2007). p31(comet) blocks Mad2 activation through structural mimicry. Cell, 131, 744-755. [PDF]

Guan, R., Dai, H., Tomchick, D.R., Dulubova, I., Machius, M., Sudhof, T.C., and Rizo, J. (2007). Crystal structure of the RIM1alpha domain at 1.7 A. Biochemistry, 46, 8988-8998. [PDF]

Yang, M., Culhane, J.C., Szewczuk, L.M., Jalili, P., Ball, H.L., Machius, M., Cole, P.A., and Yu, H. (2007). Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine. Biochemistry, 46, 8058-8065. [PDF]

Machius, M., Brautigam, C.A., Tomchick, D.R., Ward, P., Otwinowski, Z., Blevins, J.S., Deka, R.K., & Norgard, M.V. (2007). Structural and biochemical basis for polyamine binding to the Tp0655 lipoprotein of Treponema pallidum: putative role for Tp0655 (TpPotD) as a polyamine receptor. J. Mol. Biol., 373, 681-694. [PDF]

Yang, M., Culhane, J.C., Szewczuk, L.M., Gocke, C.B., Brautigam, C.A., Tomchick, D.R., Machius, M., Cole, P.A., & Yu, H. (2007). Structural basis of histone demethylation by LSD1 revealed by suicide inactivation. Nat. Struct. Molec. Biol., 14, 535-539. [PDF]

Li, J., Machius, M., Chuang, J.L., Wynn, R.M., and Chuang, D.T. (2007). The two active sites in human branched-chain alpha-keto acid dehydrogenase operate independently without an obligatory alternating-site mechanism. J. Biol. Chem., 282, 11904-11913. [PDF]

Chosed, R., Tomchick, D.R., Brautigam, C.A., Mukherjee, S., Negi, V.S., Machius, M., and Orth, K. (2007). Structural analysis of Xanthomonas XopD provides insights into substrate specificity of ULPs. J. Biol. Chem., 282, 6773-6782. [PDF]

Deka, R.K., Brautigam, C.A., Tomson, F.L., Machius, M., Tomchick, D.R., and Norgard, M.V. (2007). Crystal structure of the Tp34 (TP0971) lipoprotein of Treponema pallidum: biological implications of its metal-bound state and affinity for human lactoferrin. J. Biol. Chem., 282, 5944-5958. [PDF]


2006

Yang, M., Gocke, C.B., Luo, X., Borek, D., Tomchick, D.R., Machius, M., Otwinowski, Z., and Yu, H. (2006). Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase. Mol. Cell, 23, 377-387. [PDF]

Gilles-Gonzalez, M.-A., Caceres, A.I., Sousa, E.H.S., Tomchick, D.R., Brautigam, C., Gonzalez, C., and Machius, M. (2006). A proximal arginine R206 participates in switching of the Bradyrhizobium japonicum FixL oxygen sensor. J. Mol. Biol., 360, 80-89. [PDF]

Lu, J., Machius, M., Dulubova, I., Dai, H., Sudhof, T.C., Tomchick, D.R., and Rizo, J. (2006). Structural basis for a Munc13-1 homodimer to Munc13-1/RIM heterodimer switch. PLoS Biol., 4, e192. [PDF]

Machius, M., Wynn, R.M., Chuang, J.L., Li, J., Kluger, R., Yu, D., Tomchick, D.R., Brautigam, C.A., and Chuang, D.T. (2006). A versitile conformational switch regulates reactivity in human branched-chain a-ketoacid dehydrogenase. Structure, 14, 287-298. [PDF]

Brautigam, C.A., Wynn, R.M., Chuang, J.L., Machius, M., Tomchick, D.R., and Chuang, D.T. (2006). Structural insight into interactions between dihydrolipoamide dehydrogenase (E3) and E3 binding protein of human pyruvate dehydrogenase complex. Structure, 14, 611-621. [PDF]

Deka, R.K., Brautigam, C.A., Yang, X.F., Blevins, J.S., Machius, M., Tomchick, D.R., and Norgard, M.V. (2006). The PnrA (Tp0319; TmpC) lipoprotein represents a new family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC)-like operon in Treponema pallidum. J. Biol. Chem., 281, 8072-8081. [PDF]


2005

Dai, H., Tomchick, D.R., Garcia, J., Sudhof, T.C., Machius, M., and Rizo, J. (2005). Crystal structure of the RIM2 C2A-domain at 1.4 A resolution. Biochemistry, 44, 13533-13542. [PDF]

Brautigam, C.A., Chuang, J.L., Tomchick, D.R., Machius, M., and Chuang, D.T. (2005). Crystal structure of human dihydrolipoamide dehydrogenase: NAD+/NADH binding and the structural basis of disease-causing mutations. J. Mol. Biol., 350, 543-552. [PDF]

Otomo, T., Otomo, C., Tomchick, D.R., Machius, M., and Rosen, M.K. (2005). Structural basis of Rho GTP-ase-mediated activation of the formin mDia1. Mol. Cell, 18, 273-281. [PDF]

Otomo, T., Tomchick, D.R., Otomo, C., Panchal, S.C., Machius, M., and Rosen, M.K. (2005). Structural basis of actin filament nucleation and processive capping by a formin homology 2 domain. Nature, 433, 488-494. [PDF]

Thibodeau, P.H., Brautigam, C.A., Machius, M., and Thomas, P.J. (2005). Side chain and backbone contributions of Phe508 to CFTR folding. Nat. Struct. Molec. Biol., 12, 10-16. [PDF]

 
 

2004

Deka, R.K., Neil, L., Hagman, K.E., Machius, M., Tomchick, D.R., Brautigam, C.A., and Norgard, M.V. (2004). Structural evidence that the 32-Kilodalton lipoprotein (Tp32) of Treponema pallidum is a L-Methionine-binding protein. J. Biol. Chem., 279, 55644-55650. [PDF]

Wynn, R.M., Kato, M., Machius, M., Chuang, J.L., Li, J., Tomchick, D.R., & Chuang, D.T. (2004). Moleuclar mechanism for regulation of the human mitochondrial branched-chain a-ketoacid dehydrogenase complex by phosphorylation. Structure, 12, 2185-2196. [PDF]

Li, J., Wynn, R.M., Machius, M., Chuang, J.L., Karthikeyan, S., Tomchick, D.R. and Chuang, D.T. (2004). Cross-talk between Thiamin Diphosphate Binding and Phosphorylation Loop Conformation in Human Branched-chain a-Keto Acid Decarboxylase/Dehydrogenase. J. Biol. Chem., 279, 32968-32978. [PDF]

Dai, H., Shin, O.-H., Machius, M., Tomchick, D.R., & Rizo, J. (2004). Structural Basis for the Evolutionary Inactivation of Ca2+ Binding to Synaptotagmin 4. Nat. Struct. Molec. Biol., 11, 844-849. [PDF]

 

 
 

2003

Wynn, R.W., Machius, M., Chuang, J., Li, J., Tomchick, D.R., and Chuang, D.T. (2003). Roles of His291-a and His146-b' in the Reductive Acylation Reaction Catalyzed by Human Branched-chain a-Ketoacid Dehydrogenase. J. Biol. Chem., 278, 43402-43410. [PDF]

Hu, X., Machius, M., and Yang, W. (2003). Monovalent Cation Dependence and Preference of GHKL ATPases and Kinases. FEBS Lett., 544, 268-273. [PDF]

 

 
 

2002

Michaely, P., Tomchick, D.R., Machius, M., and Anderson, R.G.W. (2002). Crystal Structure of a 12 ANK Repeat Stack from Human AnkyrinR. EMBO J., 21, 6387-6396. [PDF]

Deka, R.K., Machius, M., Norgard, M.V., and Tomchick, D.R. (2002). Crystal Structure of the 47-kDa Lipoprotein of Treponema pallidum Reveals a Novel Penicillin-binding Protein. J. Biol. Chem., 277, 41857-41862. [PDF]

Chen, X., Tomchick, D.R., Kovrigin, E., Arac, D., Machius, M., Sudhof, T.C., and Rizo, J. (2002). Three-dimensional Structure of the Complexin/SNARE Complex. Neuron, 33, 397-409. [PDF]

Zhou, T., Kurnasov, O., Tomchick, D.R., Binns, D.D., Grishin, N.V., Marquez, V.E., Osterman, A.L., and Zhang, H. (2002). Structure of Human Nicotinamide/Nicotinic Acid Mononucleotide Adenylyltransferase: Basis for the Dual Substrate Specificity and Activation of the Oncolytic Agent Tiazofurin. J. Biol. Chem., 277, 13148-13154. [PDF]

 

 
 

2001

Haines, D.C., Tomchick, D.R., Machius, M., and Peterson, J.A. (2001). Pivotal Role of Water in the Mechanism of P450-BM3. Biochemistry, 40, 13456-13465. [PDF]

Machius, M., Chuang, J.L., Wynn, R.W., Tomchick, D.R., and Chuang, D.T. (2001). Structure of Rat BCKD Kinase: Nucleotide-induced Domain Communication in a Mitochondrial Protein Kinase. Proc. Natl. Acad. Sci. USA, 98, 11218-11213. [PDF]

 
     
 
 
 
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Last modified on January 30, 2012